PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052332.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 306aa    MW: 35480.8 Da    PI: 6.5338
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052332.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-19144233198
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k +++s+v+   +l+lp +f+ +h  +++++ t+tl de+g+++e k+ ++k++    l++GW++F  a++L +gD +vF+l++  +f  +v+++
  EcC052332.10 144 FIKPMLQSHVTGGFWLSLPYNFCHKH--IPHRDDTVTLVDEDGEEFETKYLIDKNG----LSGGWRGFSIAHDLVDGDALVFQLIQPLTF--KVHIV 232
                   89*********************777..456778****************889998....************************985555..88887 PP

                   - CS
            B3  98 r 98 
                   r
  EcC052332.10 233 R 233
                   7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-21135234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-25137233IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-28142233No hitNo description
PROSITE profilePS5086311.942144235IPR003340B3 DNA binding domain
PfamPF023621.2E-16144234IPR003340B3 DNA binding domain
SMARTSM010196.1E-22144235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGKVVGSKRD YEECRRQRME ENKKRMEELR LNKLAAALTA ASPKSTPVKQ SKMRTPRRQP  60
ETYSEPVRRS SRTANKPAPN YKELKLEELN HPTKRASFDA HRDMQSYSRR DLLNRVYASD  120
TIRTYAIERA EQLQSSLDAE LPSFIKPMLQ SHVTGGFWLS LPYNFCHKHI PHRDDTVTLV  180
DEDGEEFETK YLIDKNGLSG GWRGFSIAHD LVDGDALVFQ LIQPLTFKVH IVRAYESEEK  240
EAEVAEGEDE EEAEDRGKEE EEAEDRGKEK EAEVRKEEKR EADVKYLTRS AKWIRASKNT  300
LFFLTP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067929.10.0PREDICTED: B3 domain-containing protein Os06g0194400 isoform X2
SwissprotQ1G3M31e-76Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A059BC431e-144A0A059BC43_EUCGR; Uncharacterized protein
STRINGXP_010067929.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-75B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]