PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051454.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 319aa    MW: 35757.4 Da    PI: 6.7391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051454.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-131459146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd+ l+  vk++G+++W++I ++  + Rt+k+c++rw +
     EcC051454.20 14 KGPWKAEEDDVLISHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 59
                     79*************************8887799**********87 PP
2Myb_DNA-binding44.24.5e-1470109344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
     EcC051454.20  70 KFSAEEERVVIELQAQFGNK-WARIATHLP-GRTDNDVKNFW 109
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-21762IPR009057Homeodomain-like
PROSITE profilePS5129414.742961IPR017930Myb domain
SMARTSM007171.6E-101363IPR001005SANT/Myb domain
SuperFamilySSF466892.25E-2713109IPR009057Homeodomain-like
CDDcd001673.01E-111661No hitNo description
PfamPF139214.8E-121767No hitNo description
PROSITE profilePS5129420.25262117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-1963115IPR009057Homeodomain-like
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002493.3E-1270109IPR001005SANT/Myb domain
CDDcd001674.06E-1170109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGKREEQQQ VLRKGPWKAE EDDVLISHVK KYGPRDWSSI RSKGLLQRTG KSCRLRWVNK  60
LRPNLKNGCK FSAEEERVVI ELQAQFGNKW ARIATHLPGR TDNDVKNFWS SRQKRLARIL  120
QASSSKQHKH KREVPAVPYH NVPTVEVPKL SSSAEEESTS RAHLCTMPYI ADPPPPLRLL  180
PPPPDLPNPG TPSASSHLAP HEFNSSEGLY SDPHMQIPFP HIPLAQFGIS FSPESQDPMS  240
RLDDPDYFSL LGPGDDASEL VDGEGFPPDM PLLDPSLCCK GGDSMMRGNV NVGKPDIFFD  300
DLPLDVPDHF EPLPSPSKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271211525126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058514.10.0PREDICTED: transcription factor MYB82
TrEMBLA0A059C4G10.0A0A059C4G1_EUCGR; Uncharacterized protein
STRINGXP_010058514.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-82MYB family protein