PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC051408.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 248aa MW: 26561.8 Da PI: 7.729 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.9 | 1.4e-12 | 116 | 142 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ EcC051408.10 116 PGQPECQFYMKTGDCKFGAVCRFHHPR 142 5789*********************96 PP | |||||||
2 | zf-CCCH | 41.2 | 2.8e-13 | 162 | 188 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ EcC051408.10 162 PGEPLCIFYSRYGICKFGPSCKFDHPM 188 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-6 | 115 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 121 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-10 | 163 | 188 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 164 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 166 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
SPTTPTQQSY PGVTSWSRAS FIPSPRWQGP SSYTPLIVPQ GMVSIPGWNA YSGQLGSVSS 60 SDSQLIMMGQ SQIFGSSGQS DSVNTGSPGA FSSYQSGSVP VGFYALQRDN IFPERPGQPE 120 CQFYMKTGDC KFGAVCRFHH PRERLLPAPD CLLSPIGLPL RPGEPLCIFY SRYGICKFGP 180 SCKFDHPMGI LNNLSASSPS GAPVRRMLAS SSGTAALVLS ESGPGNPRRL SLSETRQIPS 240 DDNIDSDE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010038283.1 | 1e-177 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 1e-121 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A059D274 | 1e-175 | A0A059D274_EUCGR; Uncharacterized protein | ||||
STRING | XP_010038283.1 | 1e-176 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-74 | zinc finger protein 1 |