PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC051244.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 30983.6 Da PI: 8.3396 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v ++G g+W+++ r g++R++k+c++rw +yl EcC051244.10 16 KGPWTPEEDKLLSEYVGLHGEGRWSSVGRSAGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 1.9e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ EcC051244.10 69 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.805 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.03E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.572 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.16E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MVGMMGWGGQ EQGWRKGPWT PEEDKLLSEY VGLHGEGRWS SVGRSAGLNR SGKSCRLRWV 60 NYLRPGLKRG QITPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKDRS 120 AHKQERRSRR AQGIKQNLKH HQQQRQQQEA QAESEAAYES ESMLSTLQAE PNDRRERIME 180 ETRAVKEAVP LHATAEDHCL PAQEVPSWSD FVADHVLWGG LWNFDDTHCP FDQPSNCNKT 240 AMQNQALGAG FSRDLHGGGY YIFQGNVVDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 16 | 117 | 7 | 107 | B-MYB |
1h8a_C | 6e-24 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029405.1 | 0.0 | PREDICTED: transcription factor MYB57 | ||||
TrEMBL | A0A059ARJ3 | 1e-138 | A0A059ARJ3_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010029405.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-66 | myb domain protein 121 |