PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC051221.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 446aa MW: 50117.9 Da PI: 4.935 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 322.2 | 1e-98 | 68 | 445 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL+ecA+a+s++d +++++lL+ l+elasp+gd q+la+yf++AL + ++s++++yk+l + +++++ + + + f+evsP+ +f+h++ N EcC051221.10 68 RLLMECARAISDKDSTKIHQLLWMLNELASPYGDCDQKLASYFLQALFCKATDSGHRCYKTLVSVAEKSHGFDVARKLILKFQEVSPWTTFGHVASN 164 69************************************************************9999986555555555555**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLr 195 aIlea+ege+++HiiD++ + ++QWp+Ll++La+R++++p+l++T+v +s+ ++e+g+r++kfA+ +gvpfe n++ ++l +l+ ++L EcC051221.10 165 GAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDETPRLKLTVVIT-ASVVGSVMKEIGQRMEKFARLMGVPFELNLIsGLNNLGELTEDKLG 260 ************************************************99.668999************************95567*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErell 290 +k++Ea+a+n++ +l r+ +er e++++++s +P++++vve+ead ++ +F++ f e+l++y++ f++le++++++s+er ++Ere EcC051221.10 261 IKEDEAIAINCIGALRRVE------VDERGEIIRMFQSFRPRIMTVVEEEADFssTRDDFVKCFEECLKFYTMYFEMLEESFAPTSNERLMLERE-C 350 *****************97......445889*******************999545569************************************.8 PP GRAS 291 greivnvvacegaerr....erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve........eesgslvlgWkdrpLvsvSaWr 374 +r+iv v+ac + +r +r+e+ ++W+erl+eaGF++v +s+++++++k+ll+++ g+++ ++s+ ++l Wk++pLv++SaW+ EcC051221.10 351 SRSIVRVLACDEGHRDggecQRRERGSQWSERLKEAGFSAVGFSDDVVDDVKALLKRYR-AGWSLVvppqgqedDSSAGIYLAWKEEPLVWASAWK 445 9*********99998644448**************************************.565655457776434477778**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.196 | 40 | 418 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-96 | 68 | 445 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDISLFTPKG TSPHLIGCDP QFIIGYGQLD MQFNSNNQPQ NSHTTTTSTS RSSDSSEPSA 60 TGNKWAPRLL MECARAISDK DSTKIHQLLW MLNELASPYG DCDQKLASYF LQALFCKATD 120 SGHRCYKTLV SVAEKSHGFD VARKLILKFQ EVSPWTTFGH VASNGAILEA LEGESKLHII 180 DISNTLCTQW PTLLESLATR NDETPRLKLT VVITASVVGS VMKEIGQRME KFARLMGVPF 240 ELNLISGLNN LGELTEDKLG IKEDEAIAIN CIGALRRVEV DERGEIIRMF QSFRPRIMTV 300 VEEEADFSST RDDFVKCFEE CLKFYTMYFE MLEESFAPTS NERLMLEREC SRSIVRVLAC 360 DEGHRDGGEC QRRERGSQWS ERLKEAGFSA VGFSDDVVDD VKALLKRYRA GWSLVVPPQG 420 QEDDSSAGIY LAWKEEPLVW ASAWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-148 | 64 | 446 | 85 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-149 | 64 | 446 | 31 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-149 | 64 | 446 | 31 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047409.1 | 0.0 | PREDICTED: protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 1e-148 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A059DBW7 | 0.0 | A0A059DBW7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047409.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-145 | GRAS family protein |