PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051022.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 134aa    MW: 15519.8 Da    PI: 10.5472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051022.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WTt+Ed++l d++k +G g W+ I+++ g++R++k+c++rw++yl
     EcC051022.10 15 RGAWTTDEDKRLTDYIKVHGEGKWRNIPKRAGLKRCGKSCRLRWLNYL 62
                     89*********************************************7 PP
2Myb_DNA-binding52.11.5e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T +E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
     EcC051022.10  68 RGNITSDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 112
                      7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5881066IPR017930Myb domain
SuperFamilySSF466898.41E-3013109IPR009057Homeodomain-like
SMARTSM007177.3E-141464IPR001005SANT/Myb domain
PfamPF002499.7E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241669IPR009057Homeodomain-like
CDDcd001673.69E-101762No hitNo description
PROSITE profilePS5129419.50967117IPR017930Myb domain
SMARTSM007171.0E-1467115IPR001005SANT/Myb domain
PfamPF002491.2E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2470115IPR009057Homeodomain-like
CDDcd001675.47E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGRSPCCSKD EGLNRGAWTT DEDKRLTDYI KVHGEGKWRN IPKRAGLKRC GKSCRLRWLN  60
YLRPDIKRGN ITSDEEDLII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN STLAKREQGE  120
KKPSLSATEK INPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291311625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047390.19e-93PREDICTED: anthocyanin regulatory C1 protein
SwissprotP102902e-62MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A059CM242e-91A0A059CM24_EUCGR; Uncharacterized protein
STRINGXP_010047390.14e-92(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-60myb domain protein 7
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]