PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050789.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 115aa MW: 12846.5 Da PI: 4.7484 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.8 | 2.1e-16 | 12 | 58 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i + r vt+skRr+g++ KA+ L+ LC+a+ av++fs+ gk y + EcC050789.10 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARTAVLVFSPAGKPYSF 58 66778899**********************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.217 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.4E-19 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-22 | 4 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-13 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-20 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-13 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-13 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016758 | Molecular Function | transferase activity, transferring hexosyl groups | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MGKRRRREIA EIADPAARLV TYSKRRKGLF NKASQLCRLC GARTAVLVFS PAGKPYSFGD 60 PSADEIIGDY LSHSDCDGDV TPPMGLTQWA DWMETEWEAC ATEEDLESLI LKYEA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 26 | RRREIAEIADPAARLVTYSKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045944.1 | 5e-72 | PREDICTED: MADS-box protein SOC1-like | ||||
Refseq | XP_010046031.1 | 4e-72 | PREDICTED: protein MADS AFFECTING FLOWERING 5-like | ||||
Refseq | XP_018718484.1 | 1e-73 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A059D1D1 | 5e-72 | A0A059D1D1_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010045950.1 | 3e-74 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-22 | AGAMOUS-like 61 |