PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050391.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Nin-like
Protein Properties Length: 211aa    MW: 23863.3 Da    PI: 9.1059
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050391.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.52.1e-2698147352
        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   k +s e +s+yF++pi++AAkeL+v+lT+LK++CR+ GI+RWPhRk++sl
  EcC050391.10  98 KMLSREAISEYFYMPITQAAKELNVGLTLLKKRCREVGIRRWPHRKLTSL 147
                   7899*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.57580169IPR003035RWP-RK domain
PfamPF020421.2E-21100147IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLATSYPDET WYSNLDVVEH SNAGVVKDNA IHLGDVNGLL EGIKEINGFF ETTGKKAVSS  60
GTHGDRAGLP DNMAMGNGSS GSSVERDSKE LETRTRIKML SREAISEYFY MPITQAAKEL  120
NVGLTLLKKR CREVGIRRWP HRKLTSLQAL IKNVQELGCG EDERKLQEAI ELLERERKLM  180
EEAPDLKLED KTRRLRQACF KANYKKRKLV P
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045585.11e-145PREDICTED: protein RKD4-like
SwissprotQ9M9U99e-48RKD1_ARATH; Protein RKD1
TrEMBLA0A2G9H3R82e-57A0A2G9H3R8_9LAMI; Uncharacterized protein
TrEMBLA0A2R6QH613e-57A0A2R6QH61_ACTCH; Uncharacterized protein
TrEMBLF6GT761e-57F6GT76_VITVI; Uncharacterized protein
STRINGXP_010045585.11e-144(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-44RWP-RK domain-containing protein