PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC050385.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25853.8 Da PI: 6.6023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.4 | 1.7e-13 | 117 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 + y+GVr+ + +g+++AeIrdp++ g +r +lg++ t eeAa a+++ + +++g EcC050385.10 117 CVYRGVRRWP-SGKYAAEIRDPKKSG--ARRWLGTYKTpQEEAALAYDRPAFAMRG 169 68****9999.7*********98765..**********888*******99999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-8 | 117 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-18 | 118 | 179 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.1E-28 | 118 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 118 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.952 | 118 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 119 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-26 | 119 | 179 | No hit | No description |
PRINTS | PR00367 | 1.9E-9 | 159 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MCTASSTISE SDVALLECIR QHLLNDDDFE TLAKIAENIR FHCPVSTSKT FPSLETTMSF 60 EANDDDVDIH HDPLKDAVGF ESASSFNEQP GVDRGYVEAN EAMPAVVHKY DARPGGCVYR 120 GVRRWPSGKY AAEIRDPKKS GARRWLGTYK TPQEEAALAY DRPAFAMRGT KARLNFPHSI 180 GRNEVEPERL TRKRHHSHEA GSGSLDPKPI KEDLTGFASD PKKLNGYVVS FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 116 | 184 | 3 | 70 | ATERF1 |
3gcc_A | 6e-21 | 116 | 184 | 3 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058506.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A059C4E3 | 1e-108 | A0A059C4E3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058506.1 | 1e-162 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-31 | ethylene-responsive element binding factor 13 |