PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC049879.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 556aa MW: 60948.7 Da PI: 7.003 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 223 | 279 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct++ Cp+kkkvers +++++ei+Y+g+Hnh EcC049879.10 223 DDGYNWRKYGQKQVKGSENPRSYYKCTHPACPTKKKVERSL-EGHITEIVYKGTHNHA 279 8****************************************.***************7 PP | |||||||
2 | WRKY | 104.4 | 6.2e-33 | 385 | 443 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+ EcC049879.10 385 LDDGYRWRKYGQKVVKGNHNPRSYYKCTYAGCPVRKHVERASNDMRAVITTYEGKHNHD 443 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.756 | 217 | 281 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.1E-28 | 217 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 218 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-34 | 222 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 223 | 278 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.2E-37 | 370 | 445 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-29 | 377 | 445 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.862 | 380 | 445 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-38 | 385 | 444 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 386 | 443 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 556 aa Download sequence Send to blast |
MDNNHWAFSG TAPTANGSME APKYRSTAPP SLPLSPPPIS PSGFLTFPPG LSPSDFLDSP 60 LLFSSSNVES PTVGAFAGEA ASWRSGGGGG FGGAFKGEEK LFSDFSFQPH QSRPTAAATA 120 APSSMPQSSS AMVSVDGSRS TFEQEVSSKT QDSWNYYKPL MQTDVLPEKR GRETSEFAPI 180 QNSAIPASQT STQSLTPPSE TFPANANTNP HPSYLIREQK KSDDGYNWRK YGQKQVKGSE 240 NPRSYYKCTH PACPTKKKVE RSLEGHITEI VYKGTHNHAK PLSTRRSSSQ SIQPQSSSTA 300 YLENPDRLAM VLSENGQQDS SASMGDEDFE ENSQMSNSAG DDDGSEPEAK RLRGENEYES 360 YAASGNRTVR EPRVVVQTMS EIDILDDGYR WRKYGQKVVK GNHNPRSYYK CTYAGCPVRK 420 HVERASNDMR AVITTYEGKH NHDVPAPRGS STQYMNRPQP SNNSSSIAPM PIRPSTVAGH 480 SNNSPYLSSI ENTRFQRSGN HAPFTLQMLQ SSDSYGAPGS GKQGGSYMNQ TTNWDDMFAR 540 TKEEPRDSSE FDSFLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-35 | 223 | 446 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-35 | 223 | 446 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037657.1 | 0.0 | PREDICTED: probable WRKY transcription factor 33 | ||||
Swissprot | Q8S8P5 | 1e-113 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
TrEMBL | A0A059A6P5 | 0.0 | A0A059A6P5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037657.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-112 | WRKY DNA-binding protein 33 |