PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047889.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 342aa    MW: 38052.8 Da    PI: 7.4055
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047889.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.3e-0987111126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt+ C  f   G C+ G++C+FaHg
  EcC047889.30  87 WKTRMCAKFKI-GMCRNGENCNFAHG 111
                   8**********.*************8 PP
2zf-CCCH28.42.8e-09149171325
                   S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                   ++lC+ f+ + +C+yGdrC+F H
  EcC047889.30 149 MKLCKKFYNGEECPYGDRCNFLH 171
                   689******66************ PP
3zf-CCCH41.42.3e-13228253126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt+lC  +  tG+C++G++C+FaHg
  EcC047889.30 228 WKTKLCTKWEITGQCPFGEKCHFAHG 253
                   8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-1482119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-884117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.28686113IPR000571Zinc finger, CCCH-type
SMARTSM003560.001386112IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-587111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7146173IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4146173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-9149172IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-7149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-15224260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10226258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544227255IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7227254IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0006468Biological Processprotein phosphorylation
GO:0007017Biological Processmicrotubule-based process
GO:0016592Cellular Componentmediator complex
GO:0030286Cellular Componentdynein complex
GO:0001104Molecular FunctionRNA polymerase II transcription cofactor activity
GO:0003676Molecular Functionnucleic acid binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNFSEPGLPL MPAMLHYVGG GVGGDAGGYW SQFELKSEEF DVNSEFDQPL APPSKRPRNF  60
EDNRSGSVAS NPRPNPPVNK GTTNIFWKTR MCAKFKIGMC RNGENCNFAH GIEDMRQPPP  120
NWQELVGVRD EDNKSSGNWE DDQKIIHRMK LCKKFYNGEE CPYGDRCNFL HEDPAKFRDD  180
SGRFRETSAI CIGTTGMPTG QGTGSSQSDV SRPNTGADSR VTSKPVYWKT KLCTKWEITG  240
QCPFGEKCHF AHGLADLQSP SGRFEGDAVQ TALVVATKPQ PQLLHINDGP PLMAAKGPTS  300
TEEAQSKKCL LRWKGHKKIN QIYGDWLDDL PLVQNLPNKV ES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049974.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT819e-98C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A059CX530.0A0A059CX53_EUCGR; Uncharacterized protein
STRINGXP_010049974.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-97C3H family protein