PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047835.80

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 656aa MW: 71926.9 Da PI: 7.3774

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047835.80	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	85	104	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H EcC047835.80 85 ICSFFAK-GWCIKGSSCRFLH 104 6****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.558	80	107	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-6	80	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0062	80	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.7E-5	85	104	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MNDLLEVLSY LPLILNQLCR DSLPNKRLTV PDIYAAPCSE KDKQADLQPG DGMPLSSRLT 60 TSGARLRSLS PGLELPERNK RAAIICSFFA KGWCIKGSSC RFLHIKDNVK STPELVCRHG 120 TGSSCIEEAV HDEGRKDDFE KSKSPGLPKQ LASSVANNSA LCYGSSLEQI QSQVARENES 180 MHQINPIAIS RPLGVEDLLF SAPTDSHQLP PRKHHDGHMS ADVDNGRDFQ ERSWSADDYR 240 MHASKLSSGG SGSMRGYWLP PSSGSIRSFN LGQNKQPTSH ASITEDQVTN QGKFFGNSSP 300 VTSPALNSSV KYPSTTAILP SQHSSWLSGS SRILSSFSEF SNPLPAQSIL DVDYAGLRSA 360 SLLGSSSDLA GSYSGNLSRA NISADSRPRF GNRRTFSSYD WEPSEPFRPS FLITPTSISS 420 PGSKCDPFHD RIEQHKTRDE SFRLFSSQGA SVLNTAEQQV HSDSKRNLVE ERGNNSYSVS 480 SDHRFNEHGL GKGSYLHGKD VNGSAVETAE NSVVDSQNEN EMSKENDQLS DHAKDSSHIS 540 GSSMDLGSAL GSDVAGHKDK VRQDIEMDVT QKKAADVNQE SKALRHFRVA LIDYVKELLK 600 PAWQGGRLSK DAHNLIVKKA VNKVLTTLQP QQIPPNPESI KHFLSFSQFK LTRLVE

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MNDLLEVLSY LPLILNQLCR DSLPNKRLTV PDIYAAPCSE KDKQADLQPG DGMPLSSRLT  60
TSGARLRSLS PGLELPERNK RAAIICSFFA KGWCIKGSSC RFLHIKDNVK STPELVCRHG  120
TGSSCIEEAV HDEGRKDDFE KSKSPGLPKQ LASSVANNSA LCYGSSLEQI QSQVARENES  180
MHQINPIAIS RPLGVEDLLF SAPTDSHQLP PRKHHDGHMS ADVDNGRDFQ ERSWSADDYR  240
MHASKLSSGG SGSMRGYWLP PSSGSIRSFN LGQNKQPTSH ASITEDQVTN QGKFFGNSSP  300
VTSPALNSSV KYPSTTAILP SQHSSWLSGS SRILSSFSEF SNPLPAQSIL DVDYAGLRSA  360
SLLGSSSDLA GSYSGNLSRA NISADSRPRF GNRRTFSSYD WEPSEPFRPS FLITPTSISS  420
PGSKCDPFHD RIEQHKTRDE SFRLFSSQGA SVLNTAEQQV HSDSKRNLVE ERGNNSYSVS  480
SDHRFNEHGL GKGSYLHGKD VNGSAVETAE NSVVDSQNEN EMSKENDQLS DHAKDSSHIS  540
GSSMDLGSAL GSDVAGHKDK VRQDIEMDVT QKKAADVNQE SKALRHFRVA LIDYVKELLK  600
PAWQGGRLSK DAHNLIVKKA VNKVLTTLQP QQIPPNPESI KHFLSFSQFK LTRLVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057376.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBL	A0A059C8J1	0.0	A0A059C8J1_EUCGR; Uncharacterized protein
STRING	XP_010057376.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15617	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-26	C3H family protein