PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047587.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 566aa    MW: 62624.3 Da    PI: 5.0669
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047587.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.81.3e-1081705511374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar....svselykalppsetsekn.........sseelaalklf 84 
                   lv+ Ll+cAea+  +d++la++lL+++   ++  gd++qR+a +f+ +L++rl+     ++++++++ +p+++              +e+l a++l+
  EcC047587.40 170 LVHSLLACAEAMGCRDMQLADSLLSQIWGSVTWLGDSLQRVAYCFAVGLKSRLSLlhnvNMNGTFSTTTPTNS---PndmspppisREEKLEAFHLL 263
                   689*************************************************986311223334444433333...14568999988999******* PP

          GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqG.lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                   ++++P++ f+h++aN+aI +a++g++ +HiiD+++++  lQWp+Ll++LasR+egpp slRiTg+ s +++++ ++e+    L++ A++lg++f+fn
  EcC047587.40 264 HQTTPYIAFGHMAANEAIHQAAHGSDSLHIIDLGLQHTlLQWPSLLRTLASRTEGPPrSLRITGLIS-DPDHSPMIESAMASLTHEAASLGITFQFN 359
                   ************************************9846*************88888******999.7889************************* PP

          GRAS 180 vlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                   +++   + + ++ e+L + +gEal Vn+v+q+h+ ++es  + +   ++L+++++l P++++v+eq+a+hn++ Fl rfle+l+yysa+fdslea+l
  EcC047587.40 360 IVTDPpTPSLFTKEKLGIVEGEALYVNSVMQMHQYVKESRGSLK---SILQAIRKLGPTLLTVIEQDANHNGPFFLGRFLESLHYYSAIFDSLEASL 453
                   *7555688889************************987766666...8************************************************* PP

          GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                   pr+s +r+k+E    ++ei+nvvaceg+errerhe++ +Wr++l++aGF+ v l++  ++ a+++l+ ++ dgy++  ++g+l+lgWk+rp++ +Sa
  EcC047587.40 454 PRNSVQRMKIEGNHYAEEIRNVVACEGSERRERHERADQWRRQLGRAGFQGVGLGK-CMSRARMMLSVYGCDGYTLGTDKGCLLLGWKGRPIMLASA 549
                   ******************************************************86.799************************************* PP

          GRAS 373 Wr 374
                   W+
  EcC047587.40 550 WQ 551
                   *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.234144532IPR005202Transcription factor GRAS
PfamPF035144.7E-106170551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005739Cellular Componentmitochondrion
GO:0009941Cellular Componentchloroplast envelope
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0004792Molecular Functionthiosulfate sulfurtransferase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MEALNGCLYF PMDHDSLNHD FALRRFCPAR LEQEQGQPGQ RQEEDDTLWI QIDPHCSPDC  60
DHDSTPHLTS LSEVDEFVDS FINVEDHHIH DHVGEIDGTV ISLDQFEEDI GGFSFSTAND  120
ACGDHVPLMI NSIEGDEMDI ITEKSNQNSE NARGTVNQEA SQGVDQGLHL VHSLLACAEA  180
MGCRDMQLAD SLLSQIWGSV TWLGDSLQRV AYCFAVGLKS RLSLLHNVNM NGTFSTTTPT  240
NSPNDMSPPP ISREEKLEAF HLLHQTTPYI AFGHMAANEA IHQAAHGSDS LHIIDLGLQH  300
TLLQWPSLLR TLASRTEGPP RSLRITGLIS DPDHSPMIES AMASLTHEAA SLGITFQFNI  360
VTDPPTPSLF TKEKLGIVEG EALYVNSVMQ MHQYVKESRG SLKSILQAIR KLGPTLLTVI  420
EQDANHNGPF FLGRFLESLH YYSAIFDSLE ASLPRNSVQR MKIEGNHYAE EIRNVVACEG  480
SERRERHERA DQWRRQLGRA GFQGVGLGKC MSRARMMLSV YGCDGYTLGT DKGCLLLGWK  540
GRPIMLASAW QVPSPSLSSS SSLPPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5617755025377Protein SCARECROW
5b3h_D1e-5617755025377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064080.20.0PREDICTED: DELLA protein RGL1
TrEMBLA0A059BZL30.0A0A059BZL3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064080.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-73RGA-like 1