PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047503.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 516aa    MW: 57499.1 Da    PI: 9.8239
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047503.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07405454147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +      +Rt  ++k++w ++
     EcC047503.10 405 RRPFSVSEVEALVEAVEELGTGRWRDVKLRALenaDHRTYVDLKDKWKTL 454
                      678999*********************999999**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd017690.0097218278No hitNo description
PROSITE profilePS5129415.327400459IPR017930Myb domain
SMARTSM007171.9E-7404457IPR001005SANT/Myb domain
PfamPF002491.3E-5405454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-10405455IPR009057Homeodomain-like
SuperFamilySSF466897.69E-15406487IPR009057Homeodomain-like
CDDcd116602.24E-15406456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
AICKNEIRYG MSGNLAGAIP GFGPSFGLNV EKSGKGDVDL ADHLKDSVEN SSKYPAVTNI  60
GNQIQKPLCG NPRRVASFPR CRNNTNIGSR DGDENFPRFN KFSNKIKAFR HTQRIGDRRI  120
RKLLTSKYWR AAPKLKDCET SKADGEMKPF THKRRTFYKR ERYYGDCLYK RRTLLDRSSI  180
VTFDGVFSGE SNSSSPQKNM NSDRNGSIAM MHGVKFSIKS FRIPELFIDV PETATVGSLK  240
RSVVEAVSAI LGSGLHVGIL LRGKKIRDDN RTLLQTGISC KESLDNLGFT LEPNLQTVNS  300
AIASEDVPLT VPYDMPELLT SSPENYISDP GVSDVPSDPP PLTNSSNDVD TNPESISLHS  360
DVSSDKKMSD SRALVPVPAM PLEPLAIVPV NQKNKRSELS QRRIRRPFSV SEVEALVEAV  420
EELGTGRWRD VKLRALENAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQELLDRVMA  480
AHAYWSQHQA KQQGKHQPGT LKITNEQADR MAIEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-633895111119Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122DRRIRKL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:17272298}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:12909688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032390.10.0PREDICTED: telomere repeat-binding protein 4 isoform X1
RefseqXP_010032391.10.0PREDICTED: telomere repeat-binding protein 4 isoform X2
SwissprotQ9FFY91e-149TRP4_ARATH; Telomere repeat-binding protein 4
TrEMBLA0A059AEG90.0A0A059AEG9_EUCGR; Uncharacterized protein
STRINGXP_010032390.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-106TRF-like 2
Publications ? help Back to Top
  1. Zentgraf U,Hinderhofer K,Kolb D
    Specific association of a small protein with the telomeric DNA-protein complex during the onset of leaf senescence in Arabidopsis thaliana.
    Plant Mol. Biol., 2000. 42(3): p. 429-38
    [PMID:10798613]
  2. Hwang MG,Chung IK,Kang BG,Cho MH
    Sequence-specific binding property of Arabidopsis thaliana telomeric DNA binding protein 1 (AtTBP1).
    FEBS Lett., 2001. 503(1): p. 35-40
    [PMID:11513850]
  3. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]