PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047341.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 307aa    MW: 35221.1 Da    PI: 7.2198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047341.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-107013238100
                   EEETTS...-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  38 ledesg...rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   ++d sg   +sW vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +v +f+ks
  EcC047341.20  70 VMDVSGfatNSWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSIF--HVIIFDKS 132
                   566677777*******..8887777****************************9999..99999985 PP
2B358.31.4e-18206298199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffk+ +++++ +++ l++p++f+ +h +k   +k++     s rsW+vkl  r +  +  l+ GW++F ++ gL +gD +vF+l++r++  ++v++f
  EcC047341.20 206 FFKAVVQPSYVRKS-LTIPRDFFIKHVQK---NKQIATLRYSDRSWQVKL--RSYEHTACLSFGWSSFSRETGLLVGDCCVFELIDRDDIVFRVSIF 296
                   88999999999888.***********544...23577777899*******..999999***************************999999999999 PP

                   -S CS
            B3  98 rk 99 
                   r+
  EcC047341.20 297 RS 298
                   96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.8E-432132IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-1465132IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-970130No hitNo description
Gene3DG3DSA:2.40.330.102.7E-1478144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.29280132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-24198300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-22200299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337205299IPR003340B3 DNA binding domain
CDDcd100171.43E-14205297No hitNo description
PfamPF023623.3E-15206298IPR003340B3 DNA binding domain
SMARTSM010195.0E-17206299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSVLISIFKA FAEAQSLRRT RGKGTRPEEK PFLKPTVQDK SARFLEPAIP PLPFFSTILP  60
SASRSSCWFV MDVSGFATNS WPVKLEKSDD GKVWLWKGWR GFMEHYSIGH GHLLVFKYEG  120
DSIFHVIIFD KSASEIDYPS SIESDMSNPE EEFLSRKEED VVEIKDLEGS MPCSRPSSYR  180
SSQEYGVPSH LAAFELASEF KSDHPFFKAV VQPSYVRKSL TIPRDFFIKH VQKNKQIATL  240
RYSDRSWQVK LRSYEHTACL SFGWSSFSRE TGLLVGDCCV FELIDRDDIV FRVSIFRSDG  300
KNLIYVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052031.11e-155PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A059CCB41e-148A0A059CCB4_EUCGR; Uncharacterized protein
TrEMBLA0A059CD821e-148A0A059CD82_EUCGR; Uncharacterized protein
STRINGXP_010052028.11e-153(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-17B3 family protein