PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046950.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 25145.9 Da PI: 10.4766 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.2e-13 | 82 | 187 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k+ + sd + +rl l k+ ++e+ + ++e+++++t +++ g+++ ++++++ ++ yvl ++WkeFv +n+Lke D++ + ++ + EcC046950.40 82 FEKQVKASDLKDQqNRLLLRKEDVREFilplleeDDNPEQGVEVTTYNTLGETFPMQFKMWSGK-VYVLMRNWKEFVGENKLKESDILKIWAFRDvQ 177 889999999877679*******************99999*******************777765.6999******************9988777767 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l++ + r EcC046950.40 178 TKRLCFVISR 187 7777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-17 | 82 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-11 | 82 | 187 | No hit | No description |
Pfam | PF02362 | 1.4E-9 | 82 | 187 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0019 | 82 | 189 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.22E-15 | 82 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.614 | 83 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MFSGDSTVRE EANEVLQASL FLCVLKHTGE GVSRGDKPAR SKDVQVSSSS CGPLRKPRRS 60 NPPIVRRVNA LIDSIGRCRG PFEKQVKASD LKDQQNRLLL RKEDVREFIL PLLEEDDNPE 120 QGVEVTTYNT LGETFPMQFK MWSGKVYVLM RNWKEFVGEN KLKESDILKI WAFRDVQTKR 180 LCFVISRTPK APGQIRTEKG PRSERRKRVE SKPQKALLSG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041424.1 | 1e-139 | PREDICTED: putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A058ZRC7 | 1e-138 | A0A058ZRC7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034523.1 | 1e-140 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 8e-24 | B3 family protein |