PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046844.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 239aa    MW: 25953.1 Da    PI: 5.708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046844.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1867117155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  EcC046844.10  67 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 117
                   68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-1367117IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2168126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-3268126IPR001471AP2/ERF domain
SMARTSM003802.3E-3568131IPR001471AP2/ERF domain
PROSITE profilePS5103223.45968125IPR001471AP2/ERF domain
PRINTSPR003672.4E-106980IPR001471AP2/ERF domain
CDDcd000181.20E-3269127No hitNo description
PRINTSPR003672.4E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MIEPPNSDRE TSYNSLSSPP SSPSSPTGWT DSSLNTVPKP TGHQNSADLP AESDKKIKRL  60
RDSGKHPVYR GVRMRNWGKW VSEIREPRKK SRIWLGTFPT PEMAARAHDV AALSIKGSSA  120
ILNFPELISL LPRPISLSPR DVQAAALKAA QMDKFDTITT STASSSSSMS PSSSLVSAMD  180
LSETSVELSE IIELPSLGTS YELTRPSSEF VLVDSVDGWL YHPPWLGASF DDECGYVGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19651301177Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047241.21e-171PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-74DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A059CL441e-170A0A059CL44_EUCGR; Uncharacterized protein
STRINGXP_010047241.11e-167(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]