PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC046361.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TALE | ||||||||
Protein Properties | Length: 728aa MW: 80096.5 Da PI: 6.8985 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.3e-09 | 469 | 506 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + EcC046361.10 469 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 506 554459******************************88 PP | |||||||
2 | BELL | 119.8 | 1.2e-38 | 330 | 401 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+k+kLls+l+eVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi EcC046361.10 330 EFMELQKRKTKLLSMLDEVDRRYRHYCDQMKAVVSSFEAVAGSGAATVYSALASKAMSRHFRCLRDGIVGQI 401 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.5E-65 | 263 | 399 | IPR006563 | POX domain |
Pfam | PF07526 | 1.8E-49 | 269 | 397 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 447 | 510 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.05E-12 | 450 | 511 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 450 | 514 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 451 | 518 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-28 | 453 | 517 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 467 | 506 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MPMRSEEKSS GMVVSSSSTG GFCYSDLSSS HNPAIQAQPH LVSQIPSYDS GSEIFNLASG 60 MDMIGFPKDG LQSHPPQNHV AATSALLWKG NDFFAKTVSP NNNNQSGPSS SKTVAAAGLD 120 DSAASEFYRH EFNKTDFVPA NQNLMTAAAT TSQDESTWQE SNKLVVDDSS IRCVFPCEGN 180 ERPSQGLSLS LSSANPSSIG LQSFELRHTN TSGGGGGHHS DHHQHQGDMR LFAASTSKEG 240 FFGKSHLGGH IHPQQAMMMM HQQAGQFQLR NSKYLGPAQE LLNEFCSLGA KQSDLLKHQK 300 PNKSKAYDDQ DGDNGGPSGS SKQQSLGSLE FMELQKRKTK LLSMLDEVDR RYRHYCDQMK 360 AVVSSFEAVA GSGAATVYSA LASKAMSRHF RCLRDGIVGQ IQATKKAMGE KDLASPGTTR 420 GETPRLKIID QALRQQRAFQ QMTMMDNHPW RPQRGLPERS VSVLRAWLFE HFLHPYPSDV 480 DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYMEET REHDNMGSSD GAADLEDDGR 540 PNNHNREATR VEDQKPTSDQ LVRIDSECFS SIVTSPDKSD QHHHSKMAAT RAPQNHHHHH 600 HHHHHLHPQN SGFGRVSDAY GGMEIDFSSY NHHPVTSAAP YSNDGDASHQ NFNGSGGGVS 660 LTLGLQQHGG PSHGVSLAFS SVSQNSLFYP RDHIEDCHPV QYSLLDGEGQ TLPYRNLMGA 720 QLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 8e-16 | 456 | 513 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-16 | 456 | 513 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053224.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-145 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A059CGZ0 | 0.0 | A0A059CGZ0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053224.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-130 | TALE family protein |
Publications ? help Back to Top | |||
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