PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045659.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31649.1 Da PI: 5.593 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv+ + G ++W+t+++ g+ R++k+c++rw +yl EcC045659.10 14 RGPWTIEEDHKLVNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 3e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++ EcC045659.10 67 RGAFTEMEENQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.646 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-7 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.861 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-12 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRQPCCDKV GLKRGPWTIE EDHKLVNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAF TEMEENQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQLG 120 LDPINHQPIT EEDHSKNGDE EGQTNSSKEE EGVLSKVKCM DTQEQQEQPH LKLDEATDFL 180 LNNYELLLCG SLDDGVQGLN QESNRSISQS SNSICREDSS QNQSNSNGES NCSSSSLQEH 240 HNGGGVQQWV DSVDSMLSWD GFDFLEQELF YFEDRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-28 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033365.1 | 0.0 | PREDICTED: myb-related protein 315 | ||||
Swissprot | P81394 | 8e-81 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A059AG38 | 0.0 | A0A059AG38_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033365.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-83 | myb domain protein 40 |
Publications ? help Back to Top | |||
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