PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045536.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 33592.3 Da PI: 9.972 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6e-16 | 4 | 80 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pkkf++++g++ s + l sg +Wev+l ++ ++ +l++GW +Fvk ++ g f+vF+++g s f +v +f+k EcC045536.10 4 GIPKKFVRKYGSS--LSDLVFLHLASGDVWEVEL--LRGNDGAFLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 80 59********977..776788888**********..88888889*************************99999..9999987 PP | |||||||
2 | B3 | 58 | 1.7e-18 | 184 | 284 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ff + ++++ +++ l+ p +f+ ++ + ++s ++ l+ ++ r W+v++++ ++++++ + GWk+Fv++n+Lk gD++vF+ +++ ++ +++v EcC045536.10 184 FFLAIMQPSFIRHC-LSAPARFFMKYIPNFRSSGDINLYVSDERFWSVRYKFgiYGRRRQIKFNCGWKRFVQDNNLKLGDVCVFEIMWKvRQISFRV 279 67777888889888.***********555567789***************9988888888***************************9999999999 PP EEE-S CS B3 95 kvfrk 99 +fr+ EcC045536.10 280 LIFRA 284 99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.8E-9 | 1 | 81 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.508 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-19 | 3 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.5E-13 | 4 | 80 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-19 | 4 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.60E-13 | 5 | 79 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-23 | 177 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-22 | 178 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.87E-18 | 183 | 283 | No hit | No description |
PROSITE profile | PS50863 | 12.703 | 183 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-15 | 184 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-16 | 184 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MQQGIPKKFV RKYGSSLSDL VFLHLASGDV WEVELLRGND GAFLRRGWPD FVKHYAIEHG 60 HFLVFRYEGG SAFRVVIFDK SATEIKYPLI SENDDPRMEE DVGDASVEVF EDHSDQSRRN 120 QRQELPSSTL LSPSSKKKKK KKTNERLNKQ AVGGGGNNSA CDANAGLKCE ALERATSFQS 180 PNPFFLAIMQ PSFIRHCLSA PARFFMKYIP NFRSSGDINL YVSDERFWSV RYKFGIYGRR 240 RQIKFNCGWK RFVQDNNLKL GDVCVFEIMW KVRQISFRVL IFRANRDAVE F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-12 | 171 | 285 | 35 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-12 | 171 | 285 | 35 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | KKKKKKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026406.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A059B061 | 1e-159 | A0A059B061_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026406.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 7e-19 | B3 family protein |