PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC045149.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23390.3 Da PI: 6.6767 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.5 | 5.1e-40 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g k +l++vi+ +di+++ePw+L + +++++++w+fF++ ++++a+g r++r++++gyWkatg+ v+ EcC045149.20 5 PTGFRFYPTEEELISFYLHNQLHGLKqDKLHHVIPVLDIFDTEPWNLSQlageLCREDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSAGYVH 101 89*********************9993455566**************8545654445677************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++g+kk++vfy g+ p+g+kt+W ++eyr+ EcC045149.20 102 SSDSKVIGVKKSMVFYVGKPPTGRKTQWKLNEYRA 136 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-42 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.146 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-20 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEEYPTGFRF YPTEEELISF YLHNQLHGLK QDKLHHVIPV LDIFDTEPWN LSQLAGELCR 60 EDREQWFFFA PLQEREARGG RPSRSMATGY WKATGSAGYV HSSDSKVIGV KKSMVFYVGK 120 PPTGRKTQWK LNEYRAIELW PTIPNPTSSN ISIPKLRREF TLCRVYVVSG SSQAFDRRPP 180 EVVPTETTIQ GGNDATSNEG GGCEDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 5 | 173 | 21 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034217.1 | 1e-146 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AAL3 | 1e-145 | A0A059AAL3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034217.1 | 1e-146 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-84 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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