PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC041121.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 285aa MW: 31542.8 Da PI: 6.7099

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC041121.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	13	56	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L EcC041121.50 13 GREKLRRDRLNEHFIELGNTLDPD----RPKNDKATILSDTIQLLKDL 56 59*****************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.227	6	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-12	8	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-13	10	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	12	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-6	12	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.16E-6	14	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
RDEVAVLKSQ KAGREKLRRD RLNEHFIELG NTLDPDRPKN DKATILSDTI QLLKDLTAQV 60 NQLKAEYSTL CEESHELTQE KNDLREEKAS LKSDTESLNA QYQQRARAMF PWPIMDHSVV 120 MAPPSYPYPV PVAVPSGPIP VHPPMQPYPF YATPNSSVFP NSHSTLLPFA TPNMQFEQLS 180 GHYAHPLMHL GNQSLVSSNK NDKGKERKHE KSGSSNDVTT DLELKTPGSA TDNESSSPHR 240 SSTKSMRKDD DTAERSSSTH SSSPHSVQDS SSSSIAGGSH SRAND

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066253.1	1e-175	PREDICTED: transcription factor bHLH121
Refseq	XP_010066254.1	1e-175	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	6e-77	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A059BEI9	1e-173	A0A059BEI9_EUCGR; Uncharacterized protein
STRING	XP_010066253.1	1e-174	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	7e-74	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]