PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040478.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 203aa    MW: 22491.9 Da    PI: 6.9248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040478.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-142065454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +h e Er+RRd++N++f  Lr+++P+       +++Ka+ L  Av+YI +L
  EcC040478.10 20 SHVETERQRRDKMNQRFYALRSVVPNV-----SRMDKASLLADAVDYIEEL 65
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.3011665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-121966No hitNo description
SuperFamilySSF474591.31E-171976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-112065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-172079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-142271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
IVDDDDKESS LPLSLSGPLS HVETERQRRD KMNQRFYALR SVVPNVSRMD KASLLADAVD  60
YIEELRSRID ALESKLVKYE RSSPKRLKSD RAVADVSETT SLLSNNSSTM ASTTLAVPRL  120
SEMAVEVKVL GPEAVIQVRS PNVGHPCARL MDVLEELGLA VQHASMSCVK GMMLQDVVIR  180
TPVDCLVSDH SMRDAIRNKL CKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-231875663Transcription factor MYC2
5gnj_B1e-231875663Transcription factor MYC2
5gnj_E1e-231875663Transcription factor MYC2
5gnj_F1e-231875663Transcription factor MYC2
5gnj_G1e-231875663Transcription factor MYC2
5gnj_I1e-231875663Transcription factor MYC2
5gnj_M1e-231875663Transcription factor MYC2
5gnj_N1e-231875663Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058361.11e-126PREDICTED: transcription factor MYC2-like
TrEMBLA0A059C2861e-124A0A059C286_EUCGR; Uncharacterized protein
STRINGXP_010058361.11e-125(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-33bHLH family protein