PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036940.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 401aa    MW: 45271.7 Da    PI: 5.7753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036940.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.21.6e-31573373286
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL +  ea+++++ el + +   + e+a+p g++m Rla+y+ +    r ++      + +  ++++    ++   a  + +++sP  +f+h++a
  EcC036940.100  57 HLLKAYGEAMENEQSELLDVISGCIGERANPLGNAMDRLAFYIFN----RKQD-----LNYI--KQEA---FKNFKPASYAIYQISPHGRFAHFAA 138
                    67778888999999999999999999****************875....3333.....1112..2222...344445556789************* PP

           GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..el 191
                    N++Ile++ ++ ++vH+iDfd+++ +QW aL++++a   +    lRiT ++  +++   e ee ++rL++  ++lgv++  + +   r+++l  e+
  EcC036940.100 139 NSTILESLPKHiDAVHVIDFDMGEAFQWWALIESMAMA-RRRVALRITSMKWDDEKGLIEFEEAKSRLQEQVKALGVELVVEEM---RIDALvrEM 230
                    **********99************************63.45579********9999**********************999886...555552245 PP

           GRAS 192 eeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvksl..sPk...vvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                    ++L+ +           ++ n++  l ++ +++ +   +  e+L+l k++  +P+   +++  + e+++ s +F+e f + ++yy a+++s+e+ +
  EcC036940.100 231 KRLSQRGgnnngakSQWMVFNVMKGLPHMGKRRSNR--QVGEFLRLAKEViaNPTiggIITSGQGETSRKSRNFAEFFNKNIRYYYAILESMESDF 324
                    555444355566667788888888899888443333..469********955565555799999******************************** PP

           GRAS 276 pres..eerikvE 286
                    p+++  e+   vE
  EcC036940.100 325 PSQQlvEAGLAVE 337
                    9988655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.80829400IPR005202Transcription factor GRAS
PfamPF035145.4E-2957337IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0006879Biological Processcellular iron ion homeostasis
GO:0005840Cellular Componentribosome
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0008199Molecular Functionferric iron binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEIDGFEPIS SCNDKGWTPS PTPSLFSEIS NDVSSVQASL VLPSGGMEVD YKLGLPHLLK  60
AYGEAMENEQ SELLDVISGC IGERANPLGN AMDRLAFYIF NRKQDLNYIK QEAFKNFKPA  120
SYAIYQISPH GRFAHFAANS TILESLPKHI DAVHVIDFDM GEAFQWWALI ESMAMARRRV  180
ALRITSMKWD DEKGLIEFEE AKSRLQEQVK ALGVELVVEE MRIDALVREM KRLSQRGGNN  240
NGAKSQWMVF NVMKGLPHMG KRRSNRQVGE FLRLAKEVIA NPTIGGIITS GQGETSRKSR  300
NFAEFFNKNI RYYYAILESM ESDFPSQQLV EAGLAVESLS VSPFFSCLGW FLTWEEMRER  360
LDVLLGSCGV DGWRISQASL MEAMGLISGK RSFSGNWRER E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039165.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059A7X90.0A0A059A7X9_EUCGR; Uncharacterized protein
STRINGXP_010039165.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3441322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-15RGA-like 1