PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036679.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 174aa    MW: 19417.5 Da    PI: 8.3374
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036679.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702183.31e-56131554153
        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                    +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++      ++   +++r+ + ++ +    t+   + +   +
  EcC036679.20  13 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFPGLGT 102
                   5679********************************************98887665333....344555555655333333333333...3344444 PP

        DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                   e  +lP+evss+a frcvrvs  dd + e++aYqt+v+igGh fkGiLydqG++
  EcC036679.20 103 E-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 155
                   4.56****************9888845566**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-5514155IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-271758IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.6E-23106154IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0015986Biological ProcessATP synthesis coupled proton transport
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0031669Biological Processcellular response to nutrient levels
GO:0032119Biological Processsequestering of zinc ion
GO:0043181Biological Processvacuolar sequestering
GO:0070072Biological Processvacuolar proton-transporting V-type ATPase complex assembly
GO:0000220Cellular Componentvacuolar proton-transporting V-type ATPase, V0 domain
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009705Cellular Componentplant-type vacuole membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0003993Molecular Functionacid phosphatase activity
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0009678Molecular Functionhydrogen-translocating pyrophosphatase activity
GO:0015078Molecular Functionhydrogen ion transmembrane transporter activity
GO:0045735Molecular Functionnutrient reservoir activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MMMMRGQSGM STSSSRCQDC GNQAKRDCEY RRCRTCCKSK GFHCQTHVKS TWVPAYRRHQ  60
RHQQEQQHQH LLNSVPVHQQ RSIQPQNPKR HRDTSTFPGL GTEGNLPAEV SSTATFRCVR  120
VSIEDDDAAE HYAYQTSVNI GGHAFKGILY DQGPDTCYGT AAGESSSGDP TALP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028633.11e-129PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1
SwissprotQ9XGX07e-47SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A059ANI61e-128A0A059ANI6_EUCGR; Uncharacterized protein
STRINGXP_010028633.11e-129(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-45SHI-related sequence 5
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]