PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC036646.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 291aa    MW: 33592.3 Da    PI: 9.972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC036646.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86e-164801799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +pkkf++++g++   s  + l   sg +Wev+l   ++ ++ +l++GW +Fvk   ++ g f+vF+++g s f  +v +f+k
  EcC036646.10  4 GIPKKFVRKYGSS--LSDLVFLHLASGDVWEVEL--LRGNDGAFLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 80
                  59********977..776788888**********..88888889*************************99999..9999987 PP
2B3581.7e-18184284199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                   ff + ++++  +++ l+ p +f+ ++  + ++s ++ l+ ++ r W+v++++   ++++++ +  GWk+Fv++n+Lk gD++vF+ +++ ++ +++v
  EcC036646.10 184 FFLAIMQPSFIRHC-LSAPARFFMKYIPNFRSSGDINLYVSDERFWSVRYKFgiYGRRRQIKFNCGWKRFVQDNNLKLGDVCVFEIMWKvRQISFRV 279
                   67777888889888.***********555567789***************9988888888***************************9999999999 PP

                   EEE-S CS
            B3  95 kvfrk 99 
                    +fr+
  EcC036646.10 280 LIFRA 284
                   99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.8E-9181IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19381IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-13480IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-19481IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-13579No hitNo description
Gene3DG3DSA:2.40.330.104.5E-23177285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-22178285IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-18183283No hitNo description
PROSITE profilePS5086312.703183285IPR003340B3 DNA binding domain
SMARTSM010192.3E-15184285IPR003340B3 DNA binding domain
PfamPF023624.0E-16184284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQQGIPKKFV RKYGSSLSDL VFLHLASGDV WEVELLRGND GAFLRRGWPD FVKHYAIEHG  60
HFLVFRYEGG SAFRVVIFDK SATEIKYPLI SENDDPRMEE DVGDASVEVF EDHSDQSRRN  120
QRQELPSSTL LSPSSKKKKK KKTNERLNKQ AVGGGGNNSA CDANAGLKCE ALERATSFQS  180
PNPFFLAIMQ PSFIRHCLSA PARFFMKYIP NFRSSGDINL YVSDERFWSV RYKFGIYGRR  240
RQIKFNCGWK RFVQDNNLKL GDVCVFEIMW KVRQISFRVL IFRANRDAVE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1217128535143B3 domain-containing transcription factor VRN1
4i1k_B1e-1217128535143B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026406.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A059B0611e-159A0A059B061_EUCGR; Uncharacterized protein
STRINGXP_010026406.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-19B3 family protein