PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034953.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 323aa    MW: 36716.9 Da    PI: 5.047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034953.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-1766165198
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   f+k+l++sdv+ +gr+vlpk+ aee+   ++ +e+++l+++d  s  +W ++++y  +++s++y+++ ++ e v++ngL+ +D+++F+  ++++++ 
  EcC034953.10  66 FKKELKNSDVGCLGRIVLPKREAEENlpIIPDKEGIQLVIRDvYSPHEWILRYRYwsNNNSRMYLFE-NTGELVRQNGLDIRDSITFY--EDECKKI 159
                   89*************************9444457899*****5555********9766666666666.********************..6699999 PP

                   EEEEE- CS
            B3  93 vvkvfr 98 
                   +v v+r
  EcC034953.10 160 NVLVLR 165
                   999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2461166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1964166IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-1965165No hitNo description
PROSITE profilePS508639.20666167IPR003340B3 DNA binding domain
SMARTSM010193.4E-1466167IPR003340B3 DNA binding domain
PfamPF023624.2E-1366165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MARQRSLDLH RKGSSASSTT NASASPSSNG VISSKHPMDD QTLENNGRED ERTFFMPDGK  60
RLRMLFKKEL KNSDVGCLGR IVLPKREAEE NLPIIPDKEG IQLVIRDVYS PHEWILRYRY  120
WSNNNSRMYL FENTGELVRQ NGLDIRDSIT FYEDECKKIN VLVLRPFKFL ILWTLTSERF  180
GACGTQYFSI EKVTRTEENP WNRRYRAIED LDLNTPIAPI SNEPRAAEGE EAVAPALPAR  240
QFKHGEGDTE TFAANFSTGS SVLYREYLNV ASEGTSRQPD ASTGDDQQID FDSYCRGLET  300
LTSMDPHTYS LLDQCWIGNS GST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-40581595106B3 domain-containing transcription factor LEC2
6j9c_D1e-40581595106B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I4H8G94e-53A0A2I4H8G9_JUGRE; B3 domain-containing transcription factor LEC2 isoform X2
STRINGEOY282066e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.17e-40B3 family protein