PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC034636.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 345aa    MW: 39587.5 Da    PI: 7.9425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC034636.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-17218264148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ed +l  +v+ +G+++W+ Ia++m  gR +kqc++rw+++l
     EcC034636.10 218 KGQWTPTEDRRLMMLVETHGMKRWSQIAQMMK-GRVGKQCRERWHNHL 264
                      799****************************9.*************97 PP
2Myb_DNA-binding57.43.4e-18270312145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W+ eEd++l++a+kq G++ W+ Ia++++ gRt++++k++w+
     EcC034636.10 270 KDSWSIEEDKILIQAHKQIGNK-WAEIAKRLP-GRTENSIKNHWN 312
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.823213268IPR017930Myb domain
SMARTSM007172.2E-14217266IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-31217311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-26219269IPR009057Homeodomain-like
CDDcd001671.73E-13221264No hitNo description
PfamPF139212.2E-17221279No hitNo description
SMARTSM007177.2E-16269317IPR001005SANT/Myb domain
PROSITE profilePS5129420.764269319IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-22270318IPR009057Homeodomain-like
CDDcd001671.48E-12272315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELNLGFSLD LETPPRPHLN VKGFFYNLLH SRSPDILDDD HAFTIEGSSS NPFSRVVSTP  60
QLEPSFPHPS PDPNPAATLP RGFDLRAPLL PPTPPPPSME TSPESSDGIA EHGQLKFKSL  120
FHYGPVDQRP YHDPVTEDRQ VVPLLDLNDL GSLNERLGEE AGVSSDHQWG RERDDGRDDR  180
RKREVATGLP QQQPKQKMEK IKKENEKDEA DEDPLVVKGQ WTPTEDRRLM MLVETHGMKR  240
WSQIAQMMKG RVGKQCRERW HNHLRPDIKK DSWSIEEDKI LIQAHKQIGN KWAEIAKRLP  300
GRTENSIKNH WNATKRRQFT KRKLLPDSNN SNLLQNYIRS VTTPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-452153191105C-Myb DNA-Binding Domain
1msf_C1e-452153191105C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717996.11e-178PREDICTED: transcriptional activator Myb-like
STRINGXP_010030743.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-61myb domain protein 118