PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC033843.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 169aa MW: 19038.4 Da PI: 6.2326 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ EcC033843.20 1 WAAIAARLP-GRTDNEIKNYWNT 22 *********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.09E-6 | 1 | 24 | No hit | No description |
PROSITE profile | PS51294 | 15.939 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-6 | 1 | 22 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 1 | 25 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.18E-6 | 1 | 29 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
WAAIAARLPG RTDNEIKNYW NTRLKKRVNN RIKLRVPTAC DIKVKPDRNK SSSHPHASHP 60 TIDTPKLEPG IGSQTEIPTV SANSFCTSYG VHRDDKTLEN SWYPPCSVIE EEESLWEQFP 120 ALRDLEIVEN FGGMDMHLGA TAPALVCMQQ EQVYHSGSCA DFIMDLWGN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010051860.1 | 1e-124 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | A0A059CCL1 | 1e-91 | A0A059CCL1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010051860.1 | 1e-123 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-12 | myb domain protein 84 |