PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032926.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 284aa    MW: 32074.1 Da    PI: 4.5213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032926.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20151202155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++ykGVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+Aa a+++a+ k++g
  EcC032926.10 151 TRYKGVRRRP-WGKYAAEIRDPQKNG--ARIWLGTYETPEDAALAYDRAAFKMRG 202
                   68********.***********9997..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-32151212No hitNo description
PfamPF008479.1E-15151202IPR001471AP2/ERF domain
PROSITE profilePS5103223.841152210IPR001471AP2/ERF domain
SMARTSM003807.0E-37152216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31152211IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23152211IPR016177DNA-binding domain
PRINTSPR003671.1E-12153164IPR001471AP2/ERF domain
PRINTSPR003671.1E-12192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MLQEIFSPFE TDQFDALKSI CEHLFEGNDD SVDTKFYAPT PAKMYSRSSS FSNLLLMESW  60
SELPLKVDNA EDMLVYGAMC DGMDSGWTMP STTNQELDFE VATIDYNSIG LASNQELNVE  120
VTTVDCNSIG SVTEKKLEMV EPEVQVPVEK TRYKGVRRRP WGKYAAEIRD PQKNGARIWL  180
GTYETPEDAA LAYDRAAFKM RGSKAKVNFP HLIGVAEYEP VRVSRKRFSA EHSSQSTPSD  240
DGLVTKTKRR KGEVNVDAEV DFRTPIPFPI LDFGFWSCDE QLVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30153210360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-30153217670ATERF1
3gcc_A2e-30153217670ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732614.11e-169PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A059BAV21e-132A0A059BAV2_EUCGR; Uncharacterized protein
STRINGXP_010068073.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-58ethylene-responsive element binding factor 13