PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC032904.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 238aa MW: 25518.7 Da PI: 8.379

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC032904.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	32	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC+++Cv+apyf a+q p++fa+vh++FGasn +kll+++p ++r da+ +l+yeA arardPvyG+vg+i++lqqq+ +l+aela+ EcC032904.10 32 PCGACKFLRRKCVRGCVFAPYFDADQgPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVVNLQAELAY 128 7**********************999******************************************************************* PP DUF260 97 lkee 100 ++++ EcC032904.10 129 VQAR 132 9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.291	31	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-39	32	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSNKNDNNTA SNSDPNGSSS SSTASGGGGG GPCGACKFLR RKCVRGCVFA PYFDADQGPA 60 HFAAVHRVFG ASNASKLLAR VPAHRRLDAV VTLCYEALAR ARDPVYGCVG HIFALQQQVV 120 NLQAELAYVQ ARLASLQHFP LQPLPPQSPP QSELQSSSDT ALLSEVVPNL TLPNMYFNSY 180 QLQNGALAGL QNFRMNLAEE REIEDAQLHS LARVFISSSR HLPPPGVRFD GSSPGKNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-38	28	126	7	104	LOB family transfactor Ramosa2.1
5ly0_B	8e-38	28	126	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056298.1	1e-139	PREDICTED: LOB domain-containing protein 19
Swissprot	O81322	2e-63	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A059C418	1e-138	A0A059C418_EUCGR; Uncharacterized protein
STRING	XP_010056298.1	1e-139	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	6e-55	LOB domain-containing protein 19