PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032696.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 188aa    MW: 21197.9 Da    PI: 5.7655
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032696.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.3e-2813111199
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                   aCaaC+++rrkC +dC  a+ fpa+ p++fan++ l+G +n+ +l + lp+e r++am+++++e+++ra d v G+++++++l  +++ ++ el ++
  EcC032696.30  13 ACAACRHQRRKCRPDCQWAEFFPAALPQTFANARSLYGLRNMNELTRLLPPELRRTAMETIIFESNVRAFDRVGGCYRMVRDLAARVRLVECELRHT 109
                   7********************************************************************************************9998 PP

        DUF260  98 ke 99 
                   ++
  EcC032696.30 110 HQ 111
                   87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.80712113IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-2713110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006486Biological Processprotein glycosylation
GO:0045454Biological Processcell redox homeostasis
GO:0016020Cellular Componentmembrane
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008378Molecular Functiongalactosyltransferase activity
GO:0009055Molecular Functionelectron carrier activity
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
TASASASKPD SRACAACRHQ RRKCRPDCQW AEFFPAALPQ TFANARSLYG LRNMNELTRL  60
LPPELRRTAM ETIIFESNVR AFDRVGGCYR MVRDLAARVR LVECELRHTH QLLALLRGSE  120
LSTDNNVEDD DLGLAQKSSE DQEVLMRDYF VTDDLGASTS SCRVDEPSGA NRVCQGDRLL  180
NFLDEQII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-1841131111LOB family transfactor Ramosa2.1
5ly0_B8e-1841131111LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051281.11e-132PREDICTED: LOB domain-containing protein 22-like
STRINGXP_010051281.11e-131(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.17e-24LOB domain-containing protein 7