PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC032630.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 494aa MW: 55759.4 Da PI: 5.7223 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 338.4 | 1.2e-103 | 112 | 493 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 + Lle A+a+ +++ +++q+l++ l+el+sp+gd q+la+yf++AL +r+++s+++ y+a + ++++ + +++ +++ f+evsP+ +f+h+++N EcC032630.40 112 DILLETARAIVDKNSTRVQHLMWMLNELCSPYGDIEQKLASYFLQALFSRMTDSGERSYSAWLAASDKTCSFESTRKMVLKFQEVSPWTTFGHVACN 208 679********************************************************9997776665554444455555**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvak.r 185 a++ea+ege+++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T+v+ ++++ ++ ++e+g+r++kfA+ +gvpf+f+vl+++ + EcC032630.40 209 GAMMEALEGESKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTTVVVSKANggaetsgvaaVQKVMKEIGSRMEKFARLMGVPFKFSVLYHSgD 305 **********************************************999877768999999999999*************************7777* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpre 278 l++l+l+eL++k++Eala+n+v +lh++ +++++rd v++ +++l+P++++vve+ead++ + +F+++f e+l+y+ + f+sl++++pr+ EcC032630.40 306 LSELNLDELDIKEDEALAINCVGALHSTT----TVSNRRDFVVSSFRRLQPRIITVVEEEADLDVGgdgiEFVRGFQESLRYFRVYFESLDESFPRT 398 ***************************97....777889*********************99854445679************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374 s+er ++Er gr+++++vac +++er+e +++W++rl+ GF+p +s+++ +++++llr++k +g+++ + ++ ++l+Wkd+p+v++SaWr EcC032630.40 399 SNERLMLERG-AGRAVMDLVACPPHHSVERREPASRWSRRLRGGGFNPCLFSDEVCDDVRALLRRYK-EGWSMTpCPDAGIFLTWKDQPVVWASAWR 493 **********.********************************************************.8877765999999***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.751 | 84 | 473 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-101 | 112 | 493 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization | ||||
GO:0006457 | Biological Process | protein folding | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MDTLFRLVSL QSSDQSFNSS RTSSSSRSSR QNHHYHHQPE ADEECLNIFM DEEDFSSSSS 60 KHYSYPYHPA TTSTTPTTTS STHTPHTYDP ADVSVSPARD LNFDFSSKWA SDILLETARA 120 IVDKNSTRVQ HLMWMLNELC SPYGDIEQKL ASYFLQALFS RMTDSGERSY SAWLAASDKT 180 CSFESTRKMV LKFQEVSPWT TFGHVACNGA MMEALEGESK LHIVDISNTY CTQWPTLLEA 240 LATRTDETPH LRLTTVVVSK ANGGAETSGV AAVQKVMKEI GSRMEKFARL MGVPFKFSVL 300 YHSGDLSELN LDELDIKEDE ALAINCVGAL HSTTTVSNRR DFVVSSFRRL QPRIITVVEE 360 EADLDVGGDG IEFVRGFQES LRYFRVYFES LDESFPRTSN ERLMLERGAG RAVMDLVACP 420 PHHSVERREP ASRWSRRLRG GGFNPCLFSD EVCDDVRALL RRYKEGWSMT PCPDAGIFLT 480 WKDQPVVWAS AWRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 86 | 493 | 8 | 419 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 86 | 493 | 8 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028091.1 | 0.0 | PREDICTED: protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | C5NSL4 | 0.0 | C5NSL4_EUCGR; Transcription factor GRAS family protein | ||||
STRING | XP_010028091.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |