PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032072.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 131aa    MW: 14753 Da    PI: 8.7832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032072.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.3e-074970223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ Cg +F+ + +L++H++ H
  EcC032072.10 49 TCEECGATFKKPAYLRQHMQGH 70
                  6******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6164875IPR007087Zinc finger, C2H2
SMARTSM003550.0124870IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-44971IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-589124No hitNo description
Gene3DG3DSA:3.30.160.609.7E-695124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.998122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
FKKSLLTSHI QSHHQVSSPR FVAFRCFDEV EAALAHGVEV KEGAKANNTC EECGATFKKP  60
AYLRQHMQGH SLEVGGPPEK IHQVILGHAC SIHLQRPCKC SIEDCPASYW RKDHLARHFL  120
RHKGKIFSCP V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-47PREDICTED: transcription factor IIIA
TrEMBLA0A059DCN01e-45A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.14e-47(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2062733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.26e-27transcription factor IIIA