PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029636.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 241aa    MW: 26769.5 Da    PI: 8.8102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029636.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.2e-09107129326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++lC+++ + G C yGd+C++ H+
  EcC029636.20 107 EKLCNYWVQ-GNCTYGDKCRYLHS 129
                   579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.552954IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7892955IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8104129IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6106130IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-8108127IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.04E-10125201IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.7E-11128203IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.7E-5135174IPR001680WD40 repeat
PROSITE profilePS5008214.118142183IPR001680WD40 repeat
PROSITE profilePS5029413142183IPR017986WD40-repeat-containing domain
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDMEGNKRVF QRLSGGPSTA SDSRHHPQQQ QQKVCFHWRA GKCTRHPCPF LHRELPAPAQ  60
PLSNGGAPKR FAEDSGSQFL RRGPKFTGGS NTWGRVHGGN AVAKKTEKLC NYWVQGNCTY  120
GDKCRYLHSW SLGDCFDMLT QLEGHQKVVT GIAFPSGSGN LYTGSKDETL RVWDCQSGQC  180
AGVINLGGEI GCMISEGPWV FVGLPNLVKV RWESILHFFP HFAVYKPLIF LLHCFLNGCS  240
P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061639.11e-147PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ22e-90C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A059DK491e-148A0A059DK49_EUCGR; Uncharacterized protein
STRINGXP_010061639.11e-146(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.17e-93zinc finger WD40 repeat protein 1