PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029620.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 331aa    MW: 37079.1 Da    PI: 8.1842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029620.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-074262526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   C f+++ G C yG+rC++ H+
  EcC029620.10 42 VCTFYQK-GMCTYGNRCRYEHV 62
                  6******.***********997 PP
2zf-CCCH18.82.9e-06152173426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C+ fa+ G C++G+ C+ +Hg
  EcC029620.10 152 SICS-FAAAGDCPRGEACPHIHG 173
                   6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-41035IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-61234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0651436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1733764IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-43763IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-54061IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-44261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.061148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.13149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.61E-14207281No hitNo description
Gene3DG3DSA:3.30.40.101.2E-10210276IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00713216276No hitNo description
SMARTSM001841.2E-7217274IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.578217275IPR001841Zinc finger, RING-type
PfamPF000975.0E-8217274IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010310.23304331IPR000571Zinc finger, CCCH-type
SMARTSM0035621304331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKWPYNTICA CRVLCKFFAH GACLKGEHCE YSHDWTAPQN NVCTFYQKGM CTYGNRCRYE  60
HVKASRPWSG ASSSSSSSSR TSSQPPISGC VPQVLTSRSG VHCSSTSVEV SSRSRPLGPR  120
NQPAWNRGFE QPDYVDGTDV IESRTVRPAD QSICSFAAAG DCPRGEACPH IHGDLCPTCG  180
KHCLHPFRPE EREEHMKTCE KKQKQLEALK LSQEIECSVC LDRVLSKPTA AERKFGILSE  240
CDHAFCITCI RNWRSSSPTT GMDVNSSLRA CPICRKLSYF VIPSVIWYTS KEEKQEIIDN  300
YKAKLKSIDC KHFNFGDGNC PFGTSCFYKV M
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032411.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X2
RefseqXP_010032416.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X4
RefseqXP_010032417.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X4
RefseqXP_018719619.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X2
SwissprotE0X9N41e-150C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A059AEJ40.0A0A059AEJ4_EUCGR; Uncharacterized protein
STRINGXP_010032408.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-124C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]