PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC028332.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 145aa MW: 16733 Da PI: 7.501

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC028332.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.2	4.4e-25	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp G+rF P+de+ +++ L++kv+g+ + e i+e+d+y+ ePw++ k+ e+++y F+k + + ++r +r++ sgyW+ + +v++ ++ EcC028332.40 5 LPIGYRFCPSDEQAISYCLAPKVKGDVVFP-ELIHEFDVYEKEPWKFFD--KNAEESLYVFTKLKMR---KSRVERTAGSGYWRGAQS-SDVKDCHD 94 699********************99555.78**********62..3456788998776...469********7654.67777789 PP NAM 98 elvglkktLvfy.....kgrapkgektdWvmheyrl 128 +++glkk L f + +++++ek +W+mhey++ EcC028332.40 95 NVIGLKKHLNFKvkdgsSSNSQNTEKGSWIMHEYSV 130 9*******887665677888999*****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-27	4	135	IPR003441	NAC domain
PROSITE profile	PS51005	29.265	5	145	IPR003441	NAC domain
Pfam	PF02365	2.2E-18	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003714	Molecular Function	transcription corepressor activity

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MADTLPIGYR FCPSDEQAIS YCLAPKVKGD VVFPELIHEF DVYEKEPWKF FDKNAEESLY 60 VFTKLKMRKS RVERTAGSGY WRGAQSSDVK DCHDNVIGLK KHLNFKVKDG SSSNSQNTEK 120 GSWIMHEYSV PNQEVSRIHL FFVIC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	4	130	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	4	130	19	145	NAC domain-containing protein 19
3swm_B	1e-15	4	130	19	145	NAC domain-containing protein 19
3swm_C	1e-15	4	130	19	145	NAC domain-containing protein 19
3swm_D	1e-15	4	130	19	145	NAC domain-containing protein 19
3swp_A	1e-15	4	130	19	145	NAC domain-containing protein 19
3swp_B	1e-15	4	130	19	145	NAC domain-containing protein 19
3swp_C	1e-15	4	130	19	145	NAC domain-containing protein 19
3swp_D	1e-15	4	130	19	145	NAC domain-containing protein 19
4dul_A	1e-15	4	130	16	142	NAC domain-containing protein 19
4dul_B	1e-15	4	130	16	142	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010042381.1	4e-97	PREDICTED: NAC domain-containing protein 101-like
TrEMBL	A0A059BX48	1e-99	A0A059BX48_EUCGR; Uncharacterized protein
STRING	XP_010042381.1	1e-96	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	8e-17	NAC domain containing protein 3