PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC026959.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HB-other | ||||||||
Protein Properties | Length: 199aa MW: 22663.9 Da PI: 7.2351 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.3 | 4.7e-07 | 1 | 19 | 39 | 57 |
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 ++ ++V++WFqN++a++++ EcC026959.10 1 IEGKNVFYWFQNHKARQRQ 19 6889*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.4E-4 | 1 | 19 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
IEGKNVFYWF QNHKARQRQK EKQESLAYLN RYFHKSARTA FHPPCPNAVC GPYFVPQSDI 60 GTMYPQCPKV LLPCGIKRRQ RTDFVERTKT FCRTDFAYPA HPQGHHHDVT FHQTAESNND 120 STVERNQQTL DLFPLHPTGR AVQDTSKCSQ ADHDCSRADQ DCSATTSTSS SSEARDGGDN 180 GDQPFFDFFS ANGCFCERD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043567.1 | 1e-139 | PREDICTED: WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A059D525 | 1e-138 | A0A059D525_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043567.1 | 1e-139 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6914 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-25 | WUSCHEL related homeobox 2 |