PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025649.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 398aa    MW: 42427.5 Da    PI: 6.8073
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025649.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.81.8e-21296358163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+e+kr+rrkq+NRe+ArrsR+RK+ae++eL+ ++++L+ eN +L+ e+++++ e+++l +e+
  EcC025649.30 296 EREIKRQRRKQSNRESARRSRLRKQAECDELAHRADALKDENASLRAEVSRIRSEYEQLLAEN 358
                   89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-30196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.3E-50131262No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-17289354No hitNo description
SMARTSM003381.7E-22296360IPR004827Basic-leucine zipper domain
PfamPF001701.0E-19296358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.013298361IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-11299355No hitNo description
CDDcd147022.95E-22301351No hitNo description
PROSITE patternPS000360303318IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGSSETEKSA KEKETKGPPP TTLEQSSTAS ANPVTPDWSG FQAYSPIPPH GFLASSPHAQ  60
PYMWGVQHIM PPYGTPPHPY VAMYPHGGIY AHPSMPPGSY PFSPFAMPSP NGIAEGSTTG  120
EADGKPTEVK EKLPIKRSKG SLGSLSMITG KNNELAKTSG ASANGAYSKS AESGSEGSSE  180
GSDDNSQNDS QQKSGGRQDS LEDVSQNGNA EHGSQNGGSN TPHGTVNQSV ALVPIAAAGP  240
AGVPGPTTNL NIGMDYWGTP AIPAIRGKVP STPVAGGMVT PGSRESVQSQ MWLQDEREIK  300
RQRRKQSNRE SARRSRLRKQ AECDELAHRA DALKDENASL RAEVSRIRSE YEQLLAENAS  360
LKERLGEVPA HEESRSEERH LNSESQKTAK TEHGQNAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318RRSRLRK
2312319RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055248.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_010055249.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-163BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A059C1A60.0A0A059C1A6_EUCGR; Uncharacterized protein
STRINGXP_010055248.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-135basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]