PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC025551.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 278aa MW: 30872.6 Da PI: 5.2856

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC025551.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.8	7.3e-38	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rrkC++dC+lap fpa+qp+ f+nvhklFG+sn+lk+lk l+++++++am+s++ +A++r Pv+G++g+i++lq q++q+k+el+++ EcC025551.20 10 ACAACKYQRRKCKPDCPLAPFFPANQPEIFRNVHKLFGVSNILKILKGLHPNQKPIAMRSIIDQANMRDWYPVHGCYGLIQNLQYQIQQAKEELHAI 106 7*********************************************************************************************987 PP DUF260 98 kee 100 ++ EcC025551.20 107 YAQ 109 665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.001	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-36	10	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MTLKGGASQA CAACKYQRRK CKPDCPLAPF FPANQPEIFR NVHKLFGVSN ILKILKGLHP 60 NQKPIAMRSI IDQANMRDWY PVHGCYGLIQ NLQYQIQQAK EELHAIYAQL EMYRQQNQVS 120 PVPEDVPSQL ELGMAPPNGA LPLFHQTQQQ CSAAATLPVP QNHCSNNGGV AGYDSSSDVV 180 PKDNVENALW MQNQYANYSN SNAIQMAASQ PMDVQQEIVQ DYDELQPFFD TIDDTQSYKE 240 ACDSSSESSL KDTRQSIEHA GNNELKSAAA CFSLTSVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-27	6	127	7	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-27	6	127	7	127	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028622.1	0.0	PREDICTED: LOB domain-containing protein 27
TrEMBL	A0A2C9VPJ5	1e-113	A0A2C9VPJ5_MANES; Uncharacterized protein
STRING	XP_010028622.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-52	LOB domain-containing protein 27