PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC023934.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 590aa MW: 62063.1 Da PI: 6.342

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC023934.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	207	251	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I + g Rt+ q+ rw EcC023934.30 207 RKPWSEAEDLELIAAVQKCGEGNWANILKadFKG-DRTASQLSQRW 251 789************************7621455.89998888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.019	9	76	IPR017877	Myb-like domain
PROSITE profile	PS51294	14.423	202	259	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-13	203	256	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.73E-12	204	256	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-9	206	257	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-7	207	251	IPR001005	SANT/Myb domain
CDD	cd11660	2.38E-14	208	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003779	Molecular Function	actin binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MNEAVVESKP QKRKGSISEE DISTLLQRYS ATAVLCLLQE VAQFQGVKVD WNELVKKTST 60 GITNAREYRT LWRHLAYRST LPEKLEDGDE PLDEDSDLEY ELEAFPAVST EASTEAAACV 120 KVLIGSGITS DPSLQSNSTV EAPLTINIPN GQSSRVSESS QPPCYTQGMN ITVPVSVRKQ 180 PLPAVTSNEG LDVNGLASGN NASRKKRKPW SEAEDLELIA AVQKCGEGNW ANILKADFKG 240 DRTASQLSQR WAIIRKRHGN LNVGIANSTG PQLSEAQLAA RHAVSLALDM PVKNSRTGAT 300 PNGTFGNSTQ PAAAAESPFP GNIAGLAHHQ TQQISQQRSS SVQSLSIAPK SRVPPKKASP 360 KADMSPDSMG IKAAAVAAGA RIATPSDAAS LLKAAQAKNA VHIIPSGSLI KPSSIPGGSA 420 TQSRPHPGVN FRSTGLAVTS SHAGSAAEKE STSATTSIPS APAKEPAISL QKSNISPVVA 480 TELPLNQEAK NDEKMVDSVP NNVRKEPTKE DGTSALDNAA KQVNEDDKVL VKPEVEQGNE 540 TPVEKSNVAP NAPVAVSDQS AVVSTRAEGG NDNRDKNCEN GSLQVDVAGV

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MNEAVVESKP QKRKGSISEE DISTLLQRYS ATAVLCLLQE VAQFQGVKVD WNELVKKTST  60
GITNAREYRT LWRHLAYRST LPEKLEDGDE PLDEDSDLEY ELEAFPAVST EASTEAAACV  120
KVLIGSGITS DPSLQSNSTV EAPLTINIPN GQSSRVSESS QPPCYTQGMN ITVPVSVRKQ  180
PLPAVTSNEG LDVNGLASGN NASRKKRKPW SEAEDLELIA AVQKCGEGNW ANILKADFKG  240
DRTASQLSQR WAIIRKRHGN LNVGIANSTG PQLSEAQLAA RHAVSLALDM PVKNSRTGAT  300
PNGTFGNSTQ PAAAAESPFP GNIAGLAHHQ TQQISQQRSS SVQSLSIAPK SRVPPKKASP  360
KADMSPDSMG IKAAAVAAGA RIATPSDAAS LLKAAQAKNA VHIIPSGSLI KPSSIPGGSA  420
TQSRPHPGVN FRSTGLAVTS SHAGSAAEKE STSATTSIPS APAKEPAISL QKSNISPVVA  480
TELPLNQEAK NDEKMVDSVP NNVRKEPTKE DGTSALDNAA KQVNEDDKVL VKPEVEQGNE  540
TPVEKSNVAP NAPVAVSDQS AVVSTRAEGG NDNRDKNCEN GSLQVDVAGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061556.1	0.0	PREDICTED: uncharacterized protein LOC104449190 isoform X2
TrEMBL	A0A059BRG1	0.0	A0A059BRG1_EUCGR; Uncharacterized protein
STRING	XP_010061555.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-70	MYB_related family protein