PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC023003.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GeBP | ||||||||
Protein Properties | Length: 113aa MW: 12991.9 Da PI: 11.3459 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.4 | 1.3e-10 | 31 | 110 | 5 | 98 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 r++seeDei+lL l ++ + + d+d + +s+ +k+++ q+ Ki r++ K+++k ++ ++ ++++hd k+f+l++ +Wg+ EcC023003.10 31 RIFSEEDEILLLSKL-----DRPSLSPTDLD----RIGESLGSKFTRVQIQRKIGRFRAKYRRKAET-----KVLIKTAHDLKVFDLARNLWGK 110 99********99754.....55555556765....6788999********************99999.....899*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-10 | 31 | 109 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MSLRLPSSPS SARSSDDRLP AGQQQEPRRG RIFSEEDEIL LLSKLDRPSL SPTDLDRIGE 60 SLGSKFTRVQ IQRKIGRFRA KYRRKAETKV LIKTAHDLKV FDLARNLWGK ERS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010045293.1 | 1e-28 | PREDICTED: uncharacterized protein LOC104434041 | ||||
TrEMBL | A0A059DA76 | 7e-28 | A0A059DA76_EUCGR; Uncharacterized protein | ||||
STRING | XP_010045293.1 | 5e-28 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17149 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01260.1 | 2e-07 | DNA-binding storekeeper protein-related transcriptional regulator |