PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC021384.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 200aa MW: 22894.4 Da PI: 9.9649

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC021384.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.4e-06	93	114	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C f+ + G+C G +CkF+H+ EcC021384.30 93 IVCEFYKA-GQCAKGFKCKFSHD 114 57996666.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.859	89	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	89	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	89	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	91	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.953	159	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5	159	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MPPKQAAKKA DLAKKQKMVE DKTFGLKNKN KSKNVQKYVQ TLQQSVRPKA DPSGTAAKKK 60 KEESKAKDKE LNDLFKIAVS QPKVPVGVDP KSIVCEFYKA GQCAKGFKCK FSHDLNVQRK 120 GEKIDLYSDK RDNGTMEEWD QETLEKVVES KNKEYIQNKP TDIVCKYFLE AVEKKQYGWF 180 WVCPNGGKDC HYRHALPPGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238516.1	1e-126	PREDICTED: zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	1e-116	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A165ZX12	1e-126	A0A165ZX12_DAUCS; Uncharacterized protein
STRING	Gorai.002G251700.1	1e-119	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-105	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]