PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC017968.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 175aa MW: 20385.6 Da PI: 8.4883 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 103 | 142 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++l+++ k+ G + W +Ia +++ gR ++++ +w EcC017968.20 103 MTEQEEDLIYRMYKLVGDR-WGLIAGRIP-GRKPEEIERFWM 142 7****************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.0E-7 | 99 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-6 | 102 | 143 | No hit | No description |
Pfam | PF00249 | 1.0E-6 | 103 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-9 | 103 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-7 | 104 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.993 | 104 | 141 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGHDGSTRSQ TLVLLYVWLD QPFPCSSYPG HRKRRCPDAT KFFIRIGLLF LFQELIKQTW 60 VWISGGGSEP RLTVAVMKLT SSQLTKIICL AEVSSVEWKF INMTEQEEDL IYRMYKLVGD 120 RWGLIAGRIP GRKPEEIERF WMMRHHELFA NTRNETENPN VIFASLQNHI TAPEN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053801.1 | 2e-56 | PREDICTED: transcription factor CPC | ||||
TrEMBL | A0A059CI73 | 4e-55 | A0A059CI73_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053801.1 | 6e-56 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 8e-33 | MYB_related family protein |