PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015677.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 315aa    MW: 34891.3 Da    PI: 6.2627
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015677.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-08275295526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C+ f++ G C +Gd C +aHg
  EcC015677.10 275 PCPEFRK-GSCVRGDACEYAHG 295
                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.42E-1225178No hitNo description
SuperFamilySSF484031.87E-1533165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1633182IPR020683Ankyrin repeat-containing domain
PfamPF127962.9E-942149IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.71680179IPR020683Ankyrin repeat-containing domain
SMARTSM002480.3180110IPR002110Ankyrin repeat
SMARTSM002480.043115147IPR002110Ankyrin repeat
PROSITE profilePS5008810.633115150IPR002110Ankyrin repeat
PROSITE profilePS5010313.028270297IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5270296IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5275295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5275296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006568Biological Processtryptophan metabolic process
GO:0006629Biological Processlipid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0004640Molecular Functionphosphoribosylanthranilate isomerase activity
GO:0005515Molecular Functionprotein binding
GO:0016717Molecular Functionoxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
ESIMCNGSSK AKLFPSSVGM EGEFHNKDGE APRKCSALLE LAASDDLSLF KSEVEEKGCD  60
VDEASFWYGR RIGSKKMGFE ERTPLMISAL FGSTKVLKYI IETARVDVNR SCGSDKVAAL  120
HCAAAGGSSS SLEIVKLLIE ASADINSVDG NGNRPIDVLA PAGKSRCNSR NKFVRSLLKG  180
ENYVVEGDQS FDIEGEEKLV ALPKEGGEKK EYPVDVSLPD INNGFYSTDE FRMYAFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGSCVRGDAC EYAHGVFESW  300
LHPAQYRTRL CKDET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031206.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
SwissprotQ9LUZ41e-127C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A059A9U10.0A0A059A9U1_EUCGR; Uncharacterized protein
STRINGXP_010031206.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-125C3H family protein