PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC014598.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | AP2 | ||||||||
Protein Properties | Length: 608aa MW: 66478.2 Da PI: 7.589 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.5 | 5.3e-11 | 231 | 287 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g EcC014598.20 231 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 287 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 46.9 | 6.7e-15 | 330 | 381 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g EcC014598.20 330 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 381 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-8 | 231 | 287 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-17 | 231 | 297 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-14 | 231 | 296 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-11 | 232 | 295 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-21 | 232 | 301 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.174 | 232 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 233 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 330 | 391 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.79E-24 | 330 | 391 | No hit | No description |
Pfam | PF00847 | 8.3E-10 | 330 | 381 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 331 | 389 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 331 | 390 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 331 | 395 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 371 | 391 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006260 | Biological Process | DNA replication | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MAMHFSVCPI MNTRTYCFDI SKDLSAKPEA RSFTLTDDGH EPQHQQRHLD GLFLSSSSPS 60 QLARLLSLQP PPHPSPSLPL RSLQPSYRNR GKENPFLISL CFLIIEAGGV VDRDEDARPH 120 GHGPTDLSMF SGGPKLEDFL GGSATAGGAQ PLLAHFAAAP EGHHPPVGAA EAYDSELKTI 180 AASFLRGYTA EQTDVVARKQ QQQQQQQQQP LASSEEAGAK KAVDTFGQRT SIYRGVTRHR 240 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGPTT TTNFPIASYE 300 KELEEMKHMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 360 TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSIMS SNLPIGGMSG KSKNSSESTS 420 DSRSIEGSRS DDRDLSSASS LPFASSQPPS MSTLSFAIPV KADPSSDCWN ILGYHQNPNN 480 PLNNAKLISA GGGPSPSPAF YQSFENNQNA FGPDFSGCQS SNHNGYFNGG GYGGNIHQQH 540 HQEQESNHEN GNTGSNSIPY ATPIALYSSG NHENGNGYNS WIASTGLHSF QTAKQNLAVF 600 QTPIFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048645.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-161 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A059CSR6 | 0.0 | A0A059CSR6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048645.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11583 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-147 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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