PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC013628.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 384aa    MW: 42642.4 Da    PI: 7.363
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC013628.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.71.1e-431302752133
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec...eaesssssasnss 86 
                   + kkdrhski+T++g+RdRR+Rls+e+a++fFdLqd+LGfdk+skt+eWLl  +k aikel ++         +s+s sec   +            
  EcC013628.20 130 TSKKDRHSKIYTARGPRDRRMRLSLEVAREFFDLQDMLGFDKASKTVEWLLLHSKSAIKELSRSaaktnsctaGSTSTSECdvaS---GI------- 216
                   689*************************************************************655555555333335553321...22....... PP

           TCP  87 sg............kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                    +             ++k    ++k +q++ +s+  la+esr+karararert ek  ++
  EcC013628.20 217 -DeaagngdhsasvTQEKPPIkEKKTRQSRRNSFYLLARESRKKARARARERTVEKLWMR 275
                   .12222233345554444444345555556666788888*****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-43130272IPR005333Transcription factor, TCP
PROSITE profilePS5136935.758132190IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.763254271IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006290Biological Processpyrimidine dimer repair
GO:0006298Biological Processmismatch repair
GO:0045128Biological Processnegative regulation of reciprocal meiotic recombination
GO:0005886Cellular Componentplasma membrane
GO:0003684Molecular Functiondamaged DNA binding
GO:0005524Molecular FunctionATP binding
GO:0030983Molecular Functionmismatched DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFPSNSNGID PISIWDGLTI LHKPLSSDAI PNSKQEDHLV SLFNIPSPFL HYYEDDSSSF  60
LEHGLDLLLP QPQQPASSDD AAVVAHTLAN MVDLNNNVNA NEASARGGGG GGGNLKKNHS  120
APDPVPRKRT SKKDRHSKIY TARGPRDRRM RLSLEVAREF FDLQDMLGFD KASKTVEWLL  180
LHSKSAIKEL SRSAAKTNSC TAGSTSTSEC DVASGIDEAA GNGDHSASVT QEKPPIKEKK  240
TRQSRRNSFY LLARESRKKA RARARERTVE KLWMRRLDAP KPCSEAMKTD LNKSSLYETC  300
EESGIQGSNN VKAASNFLPQ SEEPQEEKNL GTTGQTVDDS LAITDRWSPT FSFNNFTSTA  360
ISQEHEFREL HLFVKPWEAY NNSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-13137190154Putative transcription factor PCF6
5zkt_B6e-13137190154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031709.10.0PREDICTED: uncharacterized protein LOC104421453
TrEMBLA0A059D0740.0A0A059D074_EUCGR; Uncharacterized protein
STRINGXP_010031709.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-27TCP domain protein 12