PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC013314.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27216.6 Da PI: 6.936 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.1 | 7.8e-41 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g + ++++vi+ ++i+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ ++ EcC013314.30 5 PTGFRFYPTEEELISFYLHNQLHGLQqDKIHRVIPVLHIFDTEPWNLPQlageLCREDREQWFFFAPMQEREARGGRPSRSMTTGYWKATGSPGYIY 101 89*********************9985666778***************656654445677********************9999************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++g+kk++vfy g+apkg+kt+W +++yr+ EcC013314.30 102 SSDNKVIGMKKSMVFYVGKAPKGRKTQWKLNQYRA 136 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-44 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.011 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-19 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEEYPTGFRF YPTEEELISF YLHNQLHGLQ QDKIHRVIPV LHIFDTEPWN LPQLAGELCR 60 EDREQWFFFA PMQEREARGG RPSRSMTTGY WKATGSPGYI YSSDNKVIGM KKSMVFYVGK 120 APKGRKTQWK LNQYRAIELS PTNSNSSSSN ISITKLKREL TLCRVYVVSG MSRAFDRRPL 180 EAVVGETTIQ GGGCAASSGG IGRGSGDISS SGVVAADVGS SNQWETASLE EPTWDWDQLD 240 WL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-32 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-32 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-32 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-32 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-32 | 5 | 166 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-32 | 5 | 166 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034219.1 | 1e-153 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 7e-88 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059ABX1 | 1e-151 | A0A059ABX1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034219.1 | 1e-152 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-84 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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