PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012898.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 225aa    MW: 26020.7 Da    PI: 8.9125
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012898.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-0690113226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   k  lC f+ + G+C  G +CkF+H+
  EcC012898.20  90 KSILCEFYKA-GQCTKGFKCKFSHD 113
                   6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.0E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.388115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-590114IPR000571Zinc finger, CCCH-type
SMARTSM003561.8158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216158196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006139Biological Processnucleobase-containing compound metabolic process
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0048364Biological Processroot development
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0009570Cellular Componentchloroplast stroma
GO:0004017Molecular Functionadenylate kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPPKQQSKAD VAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPKPD ASKIAAKKKK  60
EEEKAREKEL NDLFKIAVSQ PKVPVGVDPK SILCEFYKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DEDTMEDWDQ ETLEKVVESK KKEYNQNKPT EIVCKYFLEA VEKKQYGWFW  180
SCPNGGKDCH YRHALPPGYV LKSQMKALIE EEADKVPIED EIEDQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067249.11e-162PREDICTED: zinc finger CCCH domain-containing protein 21
SwissprotQ9SK741e-135C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A059BGV81e-161A0A059BGV8_EUCGR; Uncharacterized protein
STRINGXP_010067249.11e-161(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-133C3H family protein