PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011738.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 108aa    MW: 12524.4 Da    PI: 7.7863
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011738.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.91.1e-153459126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  +ktelC+ +++tG C+yGd C+FaHg
  EcC011738.50 34 FKTELCNKWQETGACPYGDHCQFAHG 59
                  79***********************8 PP
2zf-CCCH21.83.4e-077297126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  ykte Cr  +++  C+yG rC+F H+
  EcC011738.50 72 YKTEVCRMVLAGDMCPYGHRCHFRHS 97
                  9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-193066IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-113165IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-93360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.923361IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-133459IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-1067103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-1367100IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1887199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006310Biological ProcessDNA recombination
GO:0006333Biological Processchromatin assembly or disassembly
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0000287Molecular Functionmagnesium ion binding
GO:0003910Molecular FunctionDNA ligase (ATP) activity
GO:0005524Molecular FunctionATP binding
GO:0030976Molecular Functionthiamine pyrophosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
KESSCVQVQQ RVYVPGGKKE QEALEFEVYS QGMFKTELCN KWQETGACPY GDHCQFAHGI  60
AELRPVIRHP RYKTEVCRMV LAGDMCPYGH RCHFRHSLTE QEMMLASR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-2334100470Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062213.14e-73PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_010062214.14e-73PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9F51e-53C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A059BTI71e-71A0A059BTI7_EUCGR; Uncharacterized protein
STRINGXP_010062213.12e-72(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.15e-56C3H family protein